Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4492Glucans biosynthesis protein C EC 21. (409 aa)    
Predicted Functional Partners:
BF49_4490
Transcriptional regulator AraC family.
 
     0.781
BF49_0793
Superfamily I DNA and RNA helicases and helicase subunits.
 
    0.628
BF49_4493
Alkanal monooxygenase alpha chain EC 114143.
       0.608
BF49_0540
Polysaccharide deacetylase.
 
   
 0.583
BF49_0014
Transcriptional regulatory protein.
  
     0.483
BF49_7339
Transcriptional regulatory protein.
  
     0.483
BF49_0472
Hypothetical protein.
  
     0.464
BF49_1627
FIG00852424 hypothetical protein.
 
   
 0.459
BF49_0115
Exopolysaccharide production protein ExoQ.
 
   
 0.435
BF49_0241
FIG00440108 hypothetical protein.
  
     0.431
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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