BF49_4497 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_4497

Flavin reductase domain protein FMNbinding. (190 aa)

Predicted Functional Partners:

BF49_1444

0.652

BF49_3019

0.624

BF49_3127

0.612

BF49_3112

0.561

BF49_6462

0.561

BF49_4498

0.531

BF49_2112

0.469

BF49_6149

0.466

BF49_2689

0.463

BF49_4772

0.448

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BF49_1444	BF49_3019	Cobalamin biosynthesis protein BluB 56dimethylbenzimidazole synthase flavin destructase family.	Riboflavin kinase EC 27126 FMN adenylyltransferase EC 2772; Belongs to the ribF family.	0.535
BF49_1444	BF49_4497	Cobalamin biosynthesis protein BluB 56dimethylbenzimidazole synthase flavin destructase family.	Flavin reductase domain protein FMNbinding.	0.652
BF49_2112	BF49_3019	34dihydroxy2butanone 4phosphate synthase EC 419912 GTP cyclohydrolase II EC 35425; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	Riboflavin kinase EC 27126 FMN adenylyltransferase EC 2772; Belongs to the ribF family.	0.868
BF49_2112	BF49_4497	34dihydroxy2butanone 4phosphate synthase EC 419912 GTP cyclohydrolase II EC 35425; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	Flavin reductase domain protein FMNbinding.	0.469
BF49_2689	BF49_3112	Alkanesulfonate monooxygenase EC 114145.	Nitrilotriacetate monooxygenase component A.	0.735
BF49_2689	BF49_3127	Alkanesulfonate monooxygenase EC 114145.	Long-chain alkane monooxygenase; Coenzyme F420dependent N5N10methylene tetrahydromethanopterin reductase and related flavindependent oxidoreductases.	0.730
BF49_2689	BF49_4497	Alkanesulfonate monooxygenase EC 114145.	Flavin reductase domain protein FMNbinding.	0.463
BF49_2689	BF49_6462	Alkanesulfonate monooxygenase EC 114145.	Nitrilotriacetate monooxygenase component A.	0.747
BF49_3019	BF49_1444	Riboflavin kinase EC 27126 FMN adenylyltransferase EC 2772; Belongs to the ribF family.	Cobalamin biosynthesis protein BluB 56dimethylbenzimidazole synthase flavin destructase family.	0.535
BF49_3019	BF49_2112	Riboflavin kinase EC 27126 FMN adenylyltransferase EC 2772; Belongs to the ribF family.	34dihydroxy2butanone 4phosphate synthase EC 419912 GTP cyclohydrolase II EC 35425; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	0.868
BF49_3019	BF49_4497	Riboflavin kinase EC 27126 FMN adenylyltransferase EC 2772; Belongs to the ribF family.	Flavin reductase domain protein FMNbinding.	0.624
BF49_3112	BF49_2689	Nitrilotriacetate monooxygenase component A.	Alkanesulfonate monooxygenase EC 114145.	0.735
BF49_3112	BF49_4497	Nitrilotriacetate monooxygenase component A.	Flavin reductase domain protein FMNbinding.	0.561
BF49_3127	BF49_2689	Long-chain alkane monooxygenase; Coenzyme F420dependent N5N10methylene tetrahydromethanopterin reductase and related flavindependent oxidoreductases.	Alkanesulfonate monooxygenase EC 114145.	0.730
BF49_3127	BF49_4497	Long-chain alkane monooxygenase; Coenzyme F420dependent N5N10methylene tetrahydromethanopterin reductase and related flavindependent oxidoreductases.	Flavin reductase domain protein FMNbinding.	0.612
BF49_4497	BF49_1444	Flavin reductase domain protein FMNbinding.	Cobalamin biosynthesis protein BluB 56dimethylbenzimidazole synthase flavin destructase family.	0.652
BF49_4497	BF49_2112	Flavin reductase domain protein FMNbinding.	34dihydroxy2butanone 4phosphate synthase EC 419912 GTP cyclohydrolase II EC 35425; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	0.469
BF49_4497	BF49_2689	Flavin reductase domain protein FMNbinding.	Alkanesulfonate monooxygenase EC 114145.	0.463
BF49_4497	BF49_3019	Flavin reductase domain protein FMNbinding.	Riboflavin kinase EC 27126 FMN adenylyltransferase EC 2772; Belongs to the ribF family.	0.624
BF49_4497	BF49_3112	Flavin reductase domain protein FMNbinding.	Nitrilotriacetate monooxygenase component A.	0.561