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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4562Assimilatory nitrate reductase large subunit EC17994. (169 aa)    
Predicted Functional Partners:
BF49_4560
Hypothetical protein.
 
     0.824
BF49_1080
Antitoxin 1.
  
     0.513
BF49_0304
Bll0546 hypothetical protein.
  
     0.497
BF49_4189
Hypothetical protein.
 
     0.479
vapC
Toxin 1 PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.473
BF49_4702
Hypothetical ABC transport system periplasmic component.
  
     0.465
BF49_4561
Betalactamase domain protein.
       0.443
BF49_0871
Aerobictype carbon monoxide dehydrogenase large subunit CoxLCutL homologs.
  
     0.434
BF49_1916
Hypothetical membrane associated protein.
  
     0.431
BF49_2692
FIG00440014 hypothetical protein.
  
     0.412
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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