Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4607YbbM seven transmembrane helix protein. (245 aa)    
Predicted Functional Partners:
BF49_4608
YbbL ABC transporter ATPbinding protein.
 
 0.985
BF49_5181
Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.
  
  
  0.614
BF49_4609
Hypothetical protein.
       0.611
BF49_7046
FIG00442713 hypothetical protein.
  
 
  0.566
BF49_3929
Molybdenum transport system permease protein ModB TC 3A181; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 
  0.559
BF49_3196
Zinc ABC transporter inner membrane permease protein ZnuB.
    
  0.543
BF49_3197
Zinc ABC transporter ATPbinding protein ZnuC.
    
  0.543
BF49_0119
ABC transporter ATPbinding protein.
     
  0.534
ccmC
Cytochrome ctype biogenesis protein CcmC putative heme lyase for CcmE; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
     
  0.534
BF49_0389
ABC transporter involved in cytochrome c biogenesis CcmB subunit; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
     
  0.534
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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