BF49_4617 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_4617

14alphaglucan branching enzyme EC 24118. (624 aa)

Predicted Functional Partners:

BF49_4880

0.989

BF49_4884

0.989

BF49_7284

0.956

BF49_3961

0.954

BF49_0517

0.953

glgA

0.951

glgA-2

0.951

glgC

0.950

BF49_4764

0.928

BF49_4881

0.928

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_0517	BF49_3961	BF49_0517	BF49_3961	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.566
BF49_0517	BF49_4617	BF49_0517	BF49_4617	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	14alphaglucan branching enzyme EC 24118.	0.953
BF49_0517	BF49_4764	BF49_0517	BF49_4764	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	Maltooligosyltrehalose trehalohydrolase EC 321141.	0.968
BF49_0517	BF49_4880	BF49_0517	BF49_4880	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	Maltooligosyltrehalose synthase EC 549915.	0.509
BF49_0517	BF49_4881	BF49_0517	BF49_4881	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	Maltooligosyltrehalose trehalohydrolase EC 321141.	0.968
BF49_0517	BF49_4884	BF49_0517	BF49_4884	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	Trehalose synthase EC 549916.	0.988
BF49_0517	BF49_7284	BF49_0517	BF49_7284	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	Trehalose synthase EC 549916.	0.954
BF49_0517	glgC	BF49_0517	BF49_5208	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	Glucose1phosphate adenylyltransferase EC 27727; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.408
BF49_3961	BF49_0517	BF49_3961	BF49_0517	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	0.566
BF49_3961	BF49_4617	BF49_3961	BF49_4617	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	14alphaglucan branching enzyme EC 24118.	0.954
BF49_3961	BF49_4764	BF49_3961	BF49_4764	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Maltooligosyltrehalose trehalohydrolase EC 321141.	0.905
BF49_3961	BF49_4880	BF49_3961	BF49_4880	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Maltooligosyltrehalose synthase EC 549915.	0.740
BF49_3961	BF49_4881	BF49_3961	BF49_4881	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Maltooligosyltrehalose trehalohydrolase EC 321141.	0.906
BF49_3961	BF49_4884	BF49_3961	BF49_4884	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Trehalose synthase EC 549916.	0.987
BF49_3961	BF49_7284	BF49_3961	BF49_7284	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Trehalose synthase EC 549916.	0.964
BF49_3961	glgA	BF49_3961	BF49_1906	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Glycogen synthase ADPglucose transglucosylase EC 24121; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.972
BF49_3961	glgA-2	BF49_3961	BF49_5207	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Glycogen synthase ADPglucose transglucosylase EC 24121; Synthesizes alpha-1,4-glucan chains using ADP-glucose.	0.973
BF49_3961	glgC	BF49_3961	BF49_5208	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Glucose1phosphate adenylyltransferase EC 27727; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.997
BF49_4617	BF49_0517	BF49_4617	BF49_0517	14alphaglucan branching enzyme EC 24118.	Trehalose6phosphate phosphatase EC 31312; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	0.953
BF49_4617	BF49_3961	BF49_4617	BF49_3961	14alphaglucan branching enzyme EC 24118.	Glycogen phosphorylase EC 2411; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.954