Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4660HYPOTHETICAL TRANSMEMBRANE SIGNAL PEPTIDE PROTEIN. (170 aa)    
Predicted Functional Partners:
BF49_4653
Blr7651 hypothetical protein.
 
     0.587
BF49_2127
Blr7651 hypothetical protein.
 
     0.571
BF49_4659
Glycosyltransferase.
       0.493
BF49_6117
Bll5524 protein.
  
     0.462
BF49_2935
FIG00443663 hypothetical protein.
  
     0.441
BF49_5804
Flagellar protein FlgJ peptidoglycan hydrolase EC 321.
   
    0.425
BF49_2981
FIG00441988 hypothetical protein.
  
     0.422
BF49_6312
FIG00446684 hypothetical protein.
  
     0.413
rpiA
Ribose 5phosphate isomerase A EC 5316; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
   
    0.408
BF49_0378
FIG00441882 hypothetical protein.
  
     0.406
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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