Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4691Putative transposase. (291 aa)    
Predicted Functional Partners:
BF49_4690
Mobile element protein.
     0.986
BF49_4692
Mobile element protein.
 
   
 0.939
BF49_4693
Mobile element protein.
 
   
 0.939
BF49_4694
Hypothetical 16 Kd protein partially homologous to Y4jB and Y4rG.
 
  
 0.939
BF49_2475
Mobile element protein.
 
   
 0.797
BF49_4715
Mobile element protein.
  
     0.574
BF49_5601
Mobile element protein.
  
     0.553
BF49_3838
Mobile element protein.
  
     0.436
BF49_4667
Mobile element protein.
  
     0.418
BF49_3835
Mobile element protein.
  
   
 0.414
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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