Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4715Mobile element protein. (399 aa)    
Predicted Functional Partners:
BF49_4716
Integraserecombinase; Belongs to the 'phage' integrase family.
 
     0.943
BF49_7046
FIG00442713 hypothetical protein.
  
 0.785
BF49_5600
Mobile element protein; Belongs to the 'phage' integrase family.
 
     0.772
BF49_5181
Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.
     
 0.600
BF49_4690
Mobile element protein.
  
     0.591
BF49_4691
Putative transposase.
  
     0.574
BF49_3838
Mobile element protein.
  
     0.571
BF49_2474
Mobile element protein.
  
     0.567
BF49_4667
Mobile element protein.
  
     0.565
BF49_2475
Mobile element protein.
  
     0.564
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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