Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4720Hypothetical protein. (270 aa)    
Predicted Functional Partners:
BF49_5181
Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.
  
 
  0.549
BF49_0466
Taurine transport ATPbinding protein TauB.
  
 0.534
BF49_0848
Hydroxymethylpyrimidine ABC transporter ATPase component.
  
 0.534
BF49_1495
ABCtype probable sulfate transporter ATPase component.
  
 0.534
BF49_1844
Hydroxymethylpyrimidine ABC transporter ATPase component.
  
 0.534
BF49_1879
Nitrate ABC transporter ATPbinding protein.
  
 0.534
BF49_3522
ABC transporter ATPbinding protein.
  
 0.534
BF49_3915
ABCtype nitratesulfonatebicarbonate transport system ATPase component.
  
 0.534
BF49_5183
ABCtype nitratesulfonatebicarbonate transport system ATPase component.
  
 0.534
BF49_5329
ABC transporter ATPbinding protein with unknown substrate.
  
 0.534
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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