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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4835Hypothetical protein CbbY. (230 aa)    
Predicted Functional Partners:
cbbL
Ribulose bisphosphate carboxylase large chain EC 41139; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
  
 0.779
BF49_2159
Ribulose bisphosphate carboxylase small chain EC 41139.
 
  
 0.741
BF49_5564
FIG00440890 hypothetical protein.
  
    0.734
BF49_2163
Phosphoribulokinase EC 27119.
 
   
 0.716
tadA
tRNAspecific adenosine34 deaminase EC 354; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.664
tal
Transaldolase EC 2212 Glucose6phosphate isomerase EC 5319; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
 
 0.647
BF49_4834
Nucleosidediphosphatesugar epimerases.
 
  
 0.633
BF49_4884
Trehalose synthase EC 549916.
  
 
 0.632
BF49_2165
RuBisCO operon transcriptional regulator CbbR; Belongs to the LysR transcriptional regulatory family.
  
   
 0.513
BF49_2158
Probable RuBisCoexpression protein CbbX.
 
 
 
 0.497
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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