Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4837Dmannonate oxidoreductase EC 11157. (494 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase EC 4218; Catalyzes the dehydration of D-mannonate.
 
 
 0.993
BF49_1718
Altronate dehydratase EC 4217.
 
 
 0.840
BF49_5761
Dgalactarate dehydratase EC 42142.
 
 
 0.794
xylB
Xylulose kinase EC 27117.
 
 
 0.673
xylB-2
Xylulose kinase EC 27117.
 
 
 0.671
BF49_4838
Transcriptional regulator NanR.
 
   
 0.665
BF49_1133
2dehydro3deoxygluconate kinase EC 27145.
 
  
 0.630
BF49_4922
Muconolactone isomerase EC 5334putative; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.630
BF49_0116
PTS IIAlike nitrogenregulatory protein PtsN.
  
  
 0.610
BF49_1459
Fructokinase EC 2714.
 
  
 0.603
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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