Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4838Transcriptional regulator NanR. (270 aa)    
Predicted Functional Partners:
BF49_4839
TRAPtype transport system periplasmic component predicted Nacetylneuraminatebinding protein.
     0.868
BF49_5332
Histidine utilization repressor.
  
  
 0.678
BF49_4837
Dmannonate oxidoreductase EC 11157.
 
   
 0.665
BF49_1339
Transcriptional regulator GntR family.
 
  
 0.612
BF49_4840
TRAPtype transport system small permease component predicted Nacetylneuraminate transporter.
 
     0.605
BF49_2413
Transcriptional regulator GntR family.
 
  
 0.571
BF49_0464
Predicted biotin regulatory protein BioR GntR family.
 
  
 0.561
BF49_1520
Transcriptional regulator associated with Tricarboxylic transport.
 
  
 0.557
accD
Acetylcoenzyme A carboxyl transferase beta chain EC 6412; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
  
  
 0.526
BF49_2414
GbcA Glycine betaine demethylase subunit A.
 
 
 0.515
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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