Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4839TRAPtype transport system periplasmic component predicted Nacetylneuraminatebinding protein. (325 aa)    
Predicted Functional Partners:
BF49_4840
TRAPtype transport system small permease component predicted Nacetylneuraminate transporter.
 
 
 0.942
BF49_5116
TRAPtype transport system small permease component predicted Nacetylneuraminate transporter.
 
 
 0.941
BF49_4841
TRAPtype transport system large permease component predicted Nacetylneuraminate transporter.
 
 
 0.933
BF49_6997
Predicted gluconate TRAP family transporter DctM subunit.
 
 
 0.925
BF49_5578
TRAPtype C4dicarboxylate transport system large permease component.
 
 
 0.875
BF49_1854
TRAPtype C4dicarboxylate transport system large permease component.
 
 
 0.874
BF49_1889
TRAPtype C4dicarboxylate transport system large permease component.
 
 
 0.874
BF49_5577
TRAPtype C4dicarboxylate transport system small permease component.
 
 
 0.871
BF49_1940
TRAPtype C4dicarboxylate transport system large permease component.
 
 
 0.869
BF49_4838
Transcriptional regulator NanR.
     0.868
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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