Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
uxuAMannonate dehydratase EC 4218; Catalyzes the dehydration of D-mannonate. (396 aa)    
Predicted Functional Partners:
BF49_4837
Dmannonate oxidoreductase EC 11157.
 
 
 0.993
BF49_1133
2dehydro3deoxygluconate kinase EC 27145.
 
  
 0.990
BF49_0703
2deoxyDgluconate 3dehydrogenase EC 111125.
 
 
 0.933
BF49_4842
Lidonate 5dehydrogenase EC 111264.
 
  
 0.840
BF49_4893
6phosphogluconate dehydrogenase decarboxylating EC 11144.
    
 0.832
rpiA
Ribose 5phosphate isomerase A EC 5316; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
 0.830
BF49_2157
Ribulosephosphate 3epimerase EC 5131; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.808
BF49_5968
Ribulosephosphate 3epimerase EC 5131; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.808
BF49_1718
Altronate dehydratase EC 4217.
 
  
 0.712
BF49_4840
TRAPtype transport system small permease component predicted Nacetylneuraminate transporter.
 
   
 0.696
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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