Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4850Transcriptional regulator IclR family. (264 aa)    
Predicted Functional Partners:
BF49_4851
Succinate dehydrogenasefumarate reductase flavoprotein subunit.
 
    0.811
BF49_4852
Leucine isoleucine valine threonine and alaninebinding protein.
       0.741
BF49_3416
Transcriptional regulator IclR family.
  
     0.723
BF49_1109
Transcriptional regulator IclR family.
  
     0.678
BF49_6927
Allophanate hydrolase 2 subunit 1 EC 35154.
  
    0.618
BF49_6926
Allophanate hydrolase 2 subunit 2 EC 35154.
  
    0.610
BF49_6341
Transcriptional regulator IclR family.
  
     0.600
BF49_1120
Transcriptional regulator IclR family.
  
     0.586
BF49_1770
FIG00444536 hypothetical protein; Belongs to the D-glutamate cyclase family.
  
    0.528
BF49_6082
Mhp operon transcriptional activator.
  
     0.482
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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