Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4898FIG004684 SpoVRlike protein. (511 aa)    
Predicted Functional Partners:
BF49_4897
UPF0229 protein YeaH; Belongs to the UPF0229 family.
 
  
 0.995
BF49_4896
Serine protein kinase prkA protein Ploop containing.
 
  
 0.990
BF49_6984
Hypothetical protein.
   
    0.587
napD
Periplasmic nitrate reductase component NapD; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
   
    0.551
BF49_4899
Hypothetical protein.
       0.539
BF49_3844
Hypothetical protein.
   
    0.535
glgC
Glucose1phosphate adenylyltransferase EC 27727; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
    0.508
BF49_6398
Transcriptional regulator XRE family.
   
    0.507
BF49_6468
Multimeric flavodoxin WrbA.
  
    0.489
BF49_0486
LysM domain protein.
   
  
 0.472
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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