BF49_4931 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_4931

Hypothetical protein. (40 aa)

Predicted Functional Partners:

BF49_7046

0.785

BF49_5181

0.600

BF49_3122

0.489

BF49_4328

0.489

BF49_7065

0.489

BF49_2142

0.487

BF49_4930

0.483

cysA

0.473

BF49_4929

0.466

BF49_3431

0.458

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_2142	BF49_3431	BF49_2142	BF49_3431	Twocomponent hybrid sensor and regulator.	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	0.816
BF49_2142	BF49_4931	BF49_2142	BF49_4931	Twocomponent hybrid sensor and regulator.	Hypothetical protein.	0.487
BF49_2142	BF49_5181	BF49_2142	BF49_5181	Twocomponent hybrid sensor and regulator.	Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.	0.809
BF49_2142	BF49_7046	BF49_2142	BF49_7046	Twocomponent hybrid sensor and regulator.	FIG00442713 hypothetical protein.	0.753
BF49_3122	BF49_3431	BF49_3122	BF49_3431	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	0.574
BF49_3122	BF49_4931	BF49_3122	BF49_4931	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	Hypothetical protein.	0.489
BF49_3122	BF49_5181	BF49_3122	BF49_5181	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.	0.593
BF49_3122	BF49_7046	BF49_3122	BF49_7046	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	FIG00442713 hypothetical protein.	0.821
BF49_3122	cysA	BF49_3122	BF49_4262	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	Sulfate and thiosulfate import ATPbinding protein CysA EC 36325; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.600
BF49_3431	BF49_2142	BF49_3431	BF49_2142	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	Twocomponent hybrid sensor and regulator.	0.816
BF49_3431	BF49_3122	BF49_3431	BF49_3122	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.	0.574
BF49_3431	BF49_4328	BF49_3431	BF49_4328	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	ABCtype polar amino acid transport system protein ATPbinding protein.	0.574
BF49_3431	BF49_4931	BF49_3431	BF49_4931	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	Hypothetical protein.	0.458
BF49_3431	BF49_5181	BF49_3431	BF49_5181	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.	0.698
BF49_3431	BF49_7046	BF49_3431	BF49_7046	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	FIG00442713 hypothetical protein.	0.619
BF49_3431	BF49_7065	BF49_3431	BF49_7065	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	ABC transporter ATPbinding protein.	0.574
BF49_3431	cysA	BF49_3431	BF49_4262	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	Sulfate and thiosulfate import ATPbinding protein CysA EC 36325; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.565
BF49_4328	BF49_3431	BF49_4328	BF49_3431	ABCtype polar amino acid transport system protein ATPbinding protein.	Phosphonate ABC transporter phosphatebinding periplasmic component TC 3A191.	0.574
BF49_4328	BF49_4931	BF49_4328	BF49_4931	ABCtype polar amino acid transport system protein ATPbinding protein.	Hypothetical protein.	0.489
BF49_4328	BF49_5181	BF49_4328	BF49_5181	ABCtype polar amino acid transport system protein ATPbinding protein.	Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.	0.593