Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BF49_4936Oligopeptide ABC transporter periplasmic oligopeptidebinding protein OppA TC 3A151. (563 aa)    
Predicted Functional Partners:
BF49_4937
Oligopeptide transport system permease protein OppB TC 3A151.
 
 0.958
BF49_4938
Oligopeptide transport system permease protein OppC TC 3A151.
 
 0.951
BF49_4043
Oligopeptide transport system permease protein OppB TC 3A151.
 
 0.755
BF49_4042
Putative polyamine transporter Oligopeptide transport system permease protein OppC TC 3A151.
 
 0.739
BF49_6052
Dipeptide transport system permease protein DppC TC 3A152.
 
 0.708
BF49_1455
Dipeptide transport system permease protein DppC TC 3A152.
 
 0.700
BF49_1829
Putative glutathione transporter permease component.
 
 0.675
BF49_4044
Oligopeptide ABC transporter periplasmic oligopeptidebinding protein OppA TC 3A151.
  
  
 
0.669
BF49_6053
Dipeptide transport system permease protein DppB TC 3A152.
 
 0.669
BF49_7194
Dipeptidebinding ABC transporter periplasmic substratebinding component TC 3A152.
  
  
 
0.661
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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