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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4939Damino acid dehydrogenase small subunit EC 14991. (442 aa)    
Predicted Functional Partners:
BF49_4342
Opine oxidase subunit A.
 
 0.903
BF49_4940
D3phosphoglycerate dehydrogenase EC 11195.
 
  
 0.840
BF49_5886
Aminomethyltransferase glycine cleavage system T protein EC 21210.
 
 0.769
BF49_0998
Alanine racemase EC 5111; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.708
BF49_4936
Oligopeptide ABC transporter periplasmic oligopeptidebinding protein OppA TC 3A151.
 
     0.657
BF49_3171
Glutamate synthase NADPH large chain EC 14113.
  
 
 0.638
BF49_4938
Oligopeptide transport system permease protein OppC TC 3A151.
  
    0.615
BF49_4937
Oligopeptide transport system permease protein OppB TC 3A151.
       0.605
gcvP
Glycine dehydrogenase decarboxylating glycine cleavage system P protein EC 1442; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.583
BF49_4935
Probable transcriptional regulator.
 
  
 0.579
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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