STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4962ABC transporter ATPbinding protein. (549 aa)    
Predicted Functional Partners:
BF49_4963
Membranebound lytic murein transglycosylase B precursor EC 321.
 
     0.813
rplD
LSU ribosomal protein L4p L1e; Forms part of the polypeptide exit tunnel.
   
 
 0.765
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.764
rpmG
LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.764
rpsP
SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.
 
   0.763
rpmE
LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
 
 
   0.761
rpsC
SSU ribosomal protein S3p S3e; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.755
rpmB
LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.
 
   0.751
rplI
LSU ribosomal protein L9p; Binds to the 23S rRNA.
  
 
 0.748
rplC
LSU ribosomal protein L3p L3e; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.748
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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