Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4984Mlr2033 protein. (144 aa)    
Predicted Functional Partners:
BF49_2748
Chromosome segregation ATPases.
  
     0.672
BF49_1264
FIG00442049 hypothetical protein.
  
     0.588
BF49_7320
FIG00442456 hypothetical protein.
  
     0.572
BF49_1694
Predicted exporter of the RND superfamily Rpal 4267.
  
     0.557
BF49_0694
Blr0003 hypothetical protein.
  
     0.551
BF49_1146
Ferric siderophore transport system periplasmic binding protein TonB.
  
     0.534
BF49_0440
FIG00443183 hypothetical protein.
  
     0.525
BF49_3071
FIG00441001 hypothetical protein.
  
     0.525
BF49_1587
Mll7655 protein.
  
     0.523
BF49_5449
Blr4701 putative outermembrane immunogenic protein precursor.
  
     0.499
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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