Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_5009Malic enzyme. (410 aa)    
Predicted Functional Partners:
BF49_5008
FOG WD40like repeat.
 
     0.939
BF49_2142
Twocomponent hybrid sensor and regulator.
  
 0.875
BF49_5010
Bll6640 hypothetical protein.
 
     0.838
BF49_2182
Chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components CheY.
 
 0.789
BF49_0769
Twocomponent hybrid sensor and regulator.
  
 0.769
BF49_1446
Sensory box histidine kinaseresponse regulator.
  
 0.769
BF49_0183
Twocomponent hybrid sensor and regulator.
  
 0.757
BF49_1860
Sensory box histidine kinaseresponse regulator.
  
 0.757
BF49_4934
Chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components CheY.
  
 0.757
BF49_6156
Chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components CheY.
  
 0.757
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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