Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_5010Bll6640 hypothetical protein. (245 aa)    
Predicted Functional Partners:
BF49_5009
Malic enzyme.
 
     0.838
BF49_5008
FOG WD40like repeat.
 
     0.808
BF49_5011
Bsl6639 hypothetical protein.
       0.718
BF49_0676
Putative secreted protein.
  
     0.562
BF49_3511
Probable isomerase.
  
     0.551
BF49_5088
Protein of unknown function DUF1470.
  
     0.464
BF49_0663
Putative exported protein.
  
     0.456
BF49_0269
Transcriptional regulator ArsR family.
 
     0.454
BF49_5857
Bll5781 protein.
  
     0.442
BF49_1063
Ketosteroid isomeraserelated protein.
  
     0.435
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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