BF49_5014 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_5014

FIG00440951 hypothetical protein. (350 aa)

Predicted Functional Partners:

BF49_1267

0.904

BF49_5742

0.902

BF49_1814

0.901

BF49_5741

0.854

BF49_6587

0.674

BF49_5015

0.666

BF49_5306

0.596

BF49_4884

0.541

BF49_2512

0.530

BF49_5300

0.530

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BF49_1267	BF49_1814	Diacylglycerol kinase EC 271107; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.	Hypothetical protein.	0.908
BF49_1267	BF49_5014	Diacylglycerol kinase EC 271107; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.	FIG00440951 hypothetical protein.	0.904
BF49_1267	BF49_5742	Diacylglycerol kinase EC 271107; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.	Glycosyl transferase group 1.	0.904
BF49_1814	BF49_1267	Hypothetical protein.	Diacylglycerol kinase EC 271107; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.	0.908
BF49_1814	BF49_5014	Hypothetical protein.	FIG00440951 hypothetical protein.	0.901
BF49_1814	BF49_5742	Hypothetical protein.	Glycosyl transferase group 1.	0.901
BF49_2512	BF49_5014	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	FIG00440951 hypothetical protein.	0.530
BF49_2512	BF49_5300	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Glucose1phosphate thymidylyltransferase EC 27724.	0.916
BF49_2512	BF49_5306	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	TPR repeat.	0.760
BF49_2512	BF49_5742	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Glycosyl transferase group 1.	0.530
BF49_2512	BF49_6587	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Probable glycosyl transferase.	0.821
BF49_4884	BF49_5014	Trehalose synthase EC 549916.	FIG00440951 hypothetical protein.	0.541
BF49_4884	BF49_5306	Trehalose synthase EC 549916.	TPR repeat.	0.612
BF49_4884	BF49_5742	Trehalose synthase EC 549916.	Glycosyl transferase group 1.	0.541
BF49_5014	BF49_1267	FIG00440951 hypothetical protein.	Diacylglycerol kinase EC 271107; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.	0.904
BF49_5014	BF49_1814	FIG00440951 hypothetical protein.	Hypothetical protein.	0.901
BF49_5014	BF49_2512	FIG00440951 hypothetical protein.	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.530
BF49_5014	BF49_4884	FIG00440951 hypothetical protein.	Trehalose synthase EC 549916.	0.541
BF49_5014	BF49_5015	FIG00440951 hypothetical protein.	Phosphatidylethanolamine Nmethyltransferase EC 21117.	0.666
BF49_5014	BF49_5300	FIG00440951 hypothetical protein.	Glucose1phosphate thymidylyltransferase EC 27724.	0.530