Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_5039Transcriptional regulator GntR family domain Aspartate aminotransferase EC 2611. (456 aa)    
Predicted Functional Partners:
BF49_0820
Pyridoxal kinase EC 27135; Belongs to the pyridoxine kinase family.
  
  
 0.635
BF49_5040
ZINCFINGER PROTEIN.
       0.566
BF49_0563
Aspartokinase EC 2724; Belongs to the aspartokinase family.
   
 
 0.528
BF49_0223
Hypothetical protein YggS proline synthase cotranscribed bacterial homolog PROSC; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
 
 0.482
BF49_5647
Asparagine synthetase glutaminehydrolyzing EC 6354.
  
 
 0.464
BF49_4194
Prephenate dehydratase EC 42151.
  
 
 0.428
BF49_3262
Cyclohexadienyl dehydrogenase EC 13112EC 13143.
    
 0.426
BF49_3260
Chorismate mutase I EC 54995.
    
 0.418
BF49_5041
Salicylate esterase.
       0.416
BF49_0998
Alanine racemase EC 5111; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.415
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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