STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_5042DGPFAETKE domain protein. (117 aa)    
Predicted Functional Partners:
BF49_5043
RNA polymerase sigma70 factor ECF subfamily; Belongs to the sigma-70 factor family.
 
    0.934
BF49_4363
RNA polymerase sigma70 factor ECF subfamily; Belongs to the sigma-70 factor family.
 
    0.791
BF49_4365
PhnB protein putative DNA binding 3demethylubiquinone9 3methyltransferase domain protein.
 
    0.553
BF49_4973
COGs COG0840.
  
     0.410
BF49_4364
Hypothetical protein.
 
     0.402
BF49_5010
Bll6640 hypothetical protein.
 
    0.400
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.