STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_5072Phytoene dehydrogenase EC 11499. (545 aa)    
Predicted Functional Partners:
BF49_1690
Phytoene synthase EC 25132.
  
 
 0.865
BF49_6804
Phytoene synthase EC 25132.
  
 
 0.828
BF49_1691
Phytoene synthase EC 25132.
  
 
 0.808
BF49_2267
Electron transfer flavoproteinubiquinone oxidoreductase EC 1551; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.782
BF49_4717
Omethyltransferase family 2.
 
 
 0.766
BF49_7187
AttH component of AttEFGH ABC transport system.
  
 
 0.687
BF49_1689
Phytoene desaturase EC 11499.
    
 0.685
BF49_6759
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.665
BF49_5073
FIG01004535 hypothetical protein.
 
   
 0.660
BF49_4171
3-hydroxyacyl-CoA dehydrogenase; EnoylCoA hydratase EC 42117 Delta3cisdelta2transenoylCoA isomerase EC 5338 3hydroxyacylCoA dehydrogenase EC 11135; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.648
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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