Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
BF49_5078LongchainfattyacidCoA ligase EC 6213. (566 aa)    
Predicted Functional Partners:
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
0.986
BF49_6971
Hypothetical protein.
  
 0.937
BF49_5079
Hypothetical protein.
 
 0.885
BF49_2686
Osuccinylbenzoic acidCoA ligase EC 62126.
 
0.820
BF49_5017
Glutamate1semialdehyde21aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
  0.582
BF49_0981
3oxoacylacylcarrierprotein synthase KASII EC 231179; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.577
BF49_2264
Alphabeta hydrolase fold.
 
 0.561
BF49_3679
ButyrylCoA dehydrogenase EC 13992.
 
 
  0.551
rplF
LSU ribosomal protein L6p L9e; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.551
BF49_7097
IsovalerylCoA dehydrogenase EC 1384 AcylCoA dehydrogenase shortchain specific EC 1381.
 
 
  0.551
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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