STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_5088Protein of unknown function DUF1470. (205 aa)    
Predicted Functional Partners:
BF49_5087
Hydrolase alphabeta fold family protein At1g52510AT4G12830 homolog group3.
 
     0.732
BF49_4560
Hypothetical protein.
  
     0.526
BF49_3886
UPF0337 protein blr1496; Belongs to the UPF0337 (CsbD) family.
  
     0.505
vapC
Toxin 1 PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.502
BF49_5089
FIG00442214 hypothetical protein.
       0.494
BF49_1384
Blr3364 hypothetical protein.
  
     0.488
BF49_1080
Antitoxin 1.
  
     0.475
BF49_5010
Bll6640 hypothetical protein.
  
     0.464
BF49_1885
Oxidoreductase.
  
   
 0.422
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.