Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_5105Protein of unknown function UPF0150. (96 aa)    
Predicted Functional Partners:
BF49_5106
ATPdependent DNA helicase UvrDPcrA.
       0.800
BF49_6398
Transcriptional regulator XRE family.
 
  
 0.694
BF49_0599
Hypothetical protein.
  
  
 0.671
BF49_6759
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
  0.650
BF49_2366
VapB protein antitoxin to VapC; Antitoxin component of a type II toxin-antitoxin (TA) system.
    
 0.629
BF49_3452
Helixturnhelix motif.
    
 0.611
BF49_6107
Helixturnhelix motif.
    
 0.611
BF49_3451
Putative membrane protein.
    
 0.608
BF49_6106
Putative membrane protein.
    
 0.608
BF49_3591
Hypothetical protein.
     
 0.590
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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