Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BF49_5130COG2152 predicted glycoside hydrolase. (450 aa)    
Predicted Functional Partners:
BF49_5129
Glycosyltransferase.
 
   
 0.958
BF49_5127
Mannose6phosphate isomerase EC 5318.
 
   
 0.895
BF49_5128
Mannose6phosphate isomerase EC 5318.
     
 0.815
BF49_5126
Hypothetical protein.
       0.689
BF49_5131
Response regulator.
       0.450
glmM
Phosphoglucosamine mutase EC 54210; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
    
 0.427
BF49_3501
Phosphoglucosamine mutase EC 54210 Phosphomannomutase EC 5428.
    
 0.427
BF49_5681
Mannose6phosphate isomerase EC 5318.
    
 0.417
BF49_0114
FIG01006394 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.400
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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