Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_5159Tricarboxylate transport protein TctB. (253 aa)    
Predicted Functional Partners:
BF49_5160
Tricarboxylate transport membrane protein TctA.
 
  
 0.946
BF49_5635
Tricarboxylate transport protein TctB.
  
  
  0.917
BF49_1640
Tricarboxylate transport protein TctB.
     
  0.900
BF49_6766
Tricarboxylate transport protein TctC.
 
 
 0.739
BF49_2640
FIG00440548 hypothetical protein.
 
 
 0.733
BF49_1528
Tricarboxylate transport protein TctC.
 
 
 0.717
BF49_2673
Putative exported protein.
 
 
 0.715
BF49_5923
Tricarboxylate transport protein TctC.
 
 
 0.715
BF49_7307
FIG00440754 hypothetical protein.
 
 
 0.713
BF49_3213
FIG00440548 hypothetical protein.
 
 
 0.708
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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