Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_5164HflK protein; HflC and HflK could encode or regulate a protease. (378 aa)    
Predicted Functional Partners:
BF49_5165
HflC protein; HflC and HflK could regulate a protease.
 
 
0.996
ftsH
Cell division protein FtsH EC 3424; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.965
hflX
GTPbinding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.880
yidC
Inner membrane protein translocase component YidC long form; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
 
 0.793
BF49_5274
Cytochrome c oxidase polypeptide II EC 1931.
   
 
 0.744
BF49_5166
Putative inner membrane protein YjeT clustered with HflC.
     
 0.735
BF49_2624
Tungstencontaining formate dehydrogenase beta subunit.
   
 0.666
BF49_3177
Putative activity regulator of membrane protease YbbK.
 
 
 0.664
BF49_4269
UPF0301 protein YqgE; Belongs to the UPF0301 (AlgH) family.
 
    0.649
BF49_3023
Protease; Belongs to the peptidase M16 family.
  
 0.647
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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