Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_5174Bll6500 unknown protein. (229 aa)    
Predicted Functional Partners:
BF49_5172
Threonine dehydratase EC 43119.
   
 
 0.834
BF49_5173
Acetolactate synthase small subunit EC 2216.
       0.790
BF49_2686
Osuccinylbenzoic acidCoA ligase EC 62126.
 
 0.744
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.735
BF49_6971
Hypothetical protein.
  
 0.723
BF49_0079
Ubiquinone biosynthesis monooxygenase UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.
   
 0.676
BF49_4570
Hypothetical protein.
  
 0.568
BF49_4571
Salicylate hydroxylase EC 114131.
  
 0.568
BF49_1435
CobN component of cobalt chelatase involved in B12 biosynthesis.
  
 
 0.526
BF49_5651
SAMdependent methyltransferase Dde 2880 UbiE paralog.
 
 
 0.516
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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