STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRUPE_5G199000Protein kinase domain-containing protein. (698 aa)    
Predicted Functional Partners:
PRUPE_5G227900
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
 
0.629
PRUPE_6G162800
Uncharacterized protein.
    
 0.589
PRUPE_4G137800
Uncharacterized protein; Belongs to the cyclin family.
    
 0.589
PRUPE_1G155700
Uncharacterized protein; Belongs to the cyclin family.
    
 0.589
PRUPE_4G137700
Uncharacterized protein; Belongs to the cyclin family.
    
 0.589
PRUPE_1G374900
Uncharacterized protein; Belongs to the cyclin family.
    
 0.589
PRUPE_3G015100
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.579
PRUPE_4G088300
CPSF_A domain-containing protein.
    
 
 0.513
PRUPE_3G271500
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
     
 0.507
PRUPE_8G244400
Uncharacterized protein.
    
 
 0.481
Your Current Organism:
Prunus persica
NCBI taxonomy Id: 3760
Other names: Amygdalus persica, P. persica, Persica vulgaris, Persica vulgaris Mill., Prunus persica (L.) Batsch, Prunus persica var. densa, Prunus persica var. densa Makino, peach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.