Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRUPE_4G050700RING-type domain-containing protein. (437 aa)    
Predicted Functional Partners:
PRUPE_3G139900
RING-type domain-containing protein.
  
  
 
0.902
PRUPE_1G028000
RING-type domain-containing protein.
  
 
 0.895
PRUPE_4G202200
WD_REPEATS_REGION domain-containing protein.
    
 0.882
PRUPE_8G231300
RING-type domain-containing protein.
    
 0.874
PRUPE_6G344100
RING-type domain-containing protein.
    
 0.874
PRUPE_2G107000
Chromo domain-containing protein.
    
 0.833
PRUPE_1G218100
Uncharacterized protein.
    
 0.691
PRUPE_1G366800
E2F_TDP domain-containing protein.
    
 0.689
PRUPE_7G098100
E2F_TDP domain-containing protein.
    
 0.689
PRUPE_5G053000
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
    
  0.651
Your Current Organism:
Prunus persica
NCBI taxonomy Id: 3760
Other names: Amygdalus persica, P. persica, Persica vulgaris, Persica vulgaris Mill., Prunus persica (L.) Batsch, Prunus persica var. densa, Prunus persica var. densa Makino, peach
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