STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRUPE_3G223400MPN domain-containing protein. (2099 aa)    
Predicted Functional Partners:
PRUPE_1G353900
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.977
PRUPE_2G302300
J domain-containing protein.
   
 0.975
PRUPE_8G242900
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.973
PRUPE_7G104100
Small nuclear ribonucleoprotein G.
   
 0.973
PRUPE_3G036300
Tr-type G domain-containing protein.
   
 0.971
PRUPE_6G358100
Uncharacterized protein.
   
 0.969
PRUPE_6G342400
Small nuclear ribonucleoprotein-associated protein.
   
 0.951
PRUPE_5G168200
Small nuclear ribonucleoprotein-associated protein.
   
 0.951
PRUPE_8G065000
TOG domain-containing protein.
  
 
 0.947
PRUPE_8G239700
SFM domain-containing protein.
    
 0.935
Your Current Organism:
Prunus persica
NCBI taxonomy Id: 3760
Other names: Amygdalus persica, P. persica, Persica vulgaris, Persica vulgaris Mill., Prunus persica (L.) Batsch, Prunus persica var. densa, Prunus persica var. densa Makino, peach
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