PRUPE_1G345000 protein (Prunus persica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PRUPE_1G345000

Uncharacterized protein. (401 aa)

Predicted Functional Partners:

PRUPE_3G042400

0.686

PRUPE_2G036200

0.621

PRUPE_7G181800

0.616

PRUPE_6G138300

0.611

PRUPE_5G007400

0.611

PRUPE_3G271100

0.608

PRUPE_1G392800

0.608

PRUPE_4G121600

0.606

ycf1

0.598

PRUPE_6G007100

0.597

Your Current Organism:

Prunus persica

NCBI taxonomy Id: 3760
Other names: Amygdalus persica, P. persica, Persica vulgaris, Persica vulgaris Mill., Prunus persica (L.) Batsch, Prunus persica var. densa, Prunus persica var. densa Makino, peach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PRUPE_1G345000	PRUPE_1G392800	M5XDK0	M5XLG5	Uncharacterized protein.	Uncharacterized protein.	0.608
PRUPE_1G345000	PRUPE_2G036200	M5XDK0	M5X1F9	Uncharacterized protein.	Uncharacterized protein.	0.621
PRUPE_1G345000	PRUPE_3G042400	M5XDK0	M5X9J2	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.686
PRUPE_1G345000	PRUPE_3G271100	M5XDK0	A0A251Q666	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.608
PRUPE_1G345000	PRUPE_4G121600	M5XDK0	A0A251PJH9	Uncharacterized protein.	TAFII28 domain-containing protein.	0.606
PRUPE_1G345000	PRUPE_5G007400	M5XDK0	A0A251P4Z6	Uncharacterized protein.	Uncharacterized protein.	0.611
PRUPE_1G345000	PRUPE_6G007100	M5XDK0	M5W169	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.597
PRUPE_1G345000	PRUPE_6G138300	M5XDK0	A0A251NSW7	Uncharacterized protein.	Uncharacterized protein.	0.611
PRUPE_1G345000	PRUPE_7G181800	M5XDK0	M5W325	Uncharacterized protein.	RRM domain-containing protein.	0.616
PRUPE_1G345000	ycf1	M5XDK0	E3W0Q0	Uncharacterized protein.	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope.	0.598
PRUPE_1G392800	PRUPE_1G345000	M5XLG5	M5XDK0	Uncharacterized protein.	Uncharacterized protein.	0.608
PRUPE_1G392800	PRUPE_2G036200	M5XLG5	M5X1F9	Uncharacterized protein.	Uncharacterized protein.	0.973
PRUPE_1G392800	PRUPE_3G042400	M5XLG5	M5X9J2	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.979
PRUPE_1G392800	PRUPE_4G121600	M5XLG5	A0A251PJH9	Uncharacterized protein.	TAFII28 domain-containing protein.	0.987
PRUPE_1G392800	PRUPE_5G007400	M5XLG5	A0A251P4Z6	Uncharacterized protein.	Uncharacterized protein.	0.975
PRUPE_1G392800	PRUPE_6G007100	M5XLG5	M5W169	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.987
PRUPE_1G392800	PRUPE_6G138300	M5XLG5	A0A251NSW7	Uncharacterized protein.	Uncharacterized protein.	0.975
PRUPE_2G036200	PRUPE_1G345000	M5X1F9	M5XDK0	Uncharacterized protein.	Uncharacterized protein.	0.621
PRUPE_2G036200	PRUPE_1G392800	M5X1F9	M5XLG5	Uncharacterized protein.	Uncharacterized protein.	0.973
PRUPE_2G036200	PRUPE_3G042400	M5X1F9	M5X9J2	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.974

page 1 of 4

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About