STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA09999.1acyl-CoA thioester hydrolase, YbgC/YbaW family. (136 aa)    
Predicted Functional Partners:
SEA74634.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.988
SEA74610.1
PfaB family protein.
  
 0.943
mutM
DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.763
SEA09937.1
Hypothetical protein.
       0.754
SEA71070.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.743
SEA09881.1
Type IV pilus assembly protein PilB.
       0.737
SEA09908.1
Peptide/nickel transport system permease protein.
       0.737
SEA66946.1
[Acyl-carrier-protein] S-malonyltransferase.
  
 0.655
SEA09847.1
Peptide/nickel transport system permease protein.
       0.616
SEA09809.1
Peptide/nickel transport system substrate-binding protein.
       0.542
Your Current Organism:
Desulfuromusa kysingii
NCBI taxonomy Id: 37625
Other names: D. kysingii, DSM 7343, strain Kysw2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.