STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA26967.1Ribosome-dependent ATPase. (909 aa)    
Predicted Functional Partners:
SEA26999.1
HlyD family secretion protein.
  
 0.962
SEA26943.1
ABC-2 type transport system permease protein.
 
 
0.945
SEA11981.1
Hypothetical protein.
 
 
 0.799
SEA27025.1
Outer membrane protein TolC.
     
 0.754
SEA49131.1
ABC-2 type transport system permease protein.
 
 
0.709
SEA49107.1
ABC-2 type transport system permease protein.
 
 
0.707
SDZ75422.1
ABC-2 type transport system permease protein.
  
 
 0.689
SDZ76857.1
ABC-2 type transport system permease protein.
 
 
 0.688
SDZ83296.1
Hypothetical protein.
  
  
 0.635
SEA00267.1
Nitroreductase.
  
  
 0.635
Your Current Organism:
Desulfuromusa kysingii
NCBI taxonomy Id: 37625
Other names: D. kysingii, DSM 7343, strain Kysw2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.