STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA28899.1TRAP transporter, DctM subunit. (440 aa)    
Predicted Functional Partners:
SEA28929.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.994
SEA29238.1
TRAP transporter, DctM subunit.
  
  
 
0.913
SEA28870.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
     0.900
SEA61425.1
Spermidine/putrescine transport system substrate-binding protein.
  
     0.668
SDZ99132.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.655
SEA61356.1
Spermidine/putrescine transport system permease protein.
  
     0.630
SEA70547.1
Hypothetical protein.
  
     0.536
SEA60410.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
    0.528
SEA61379.1
Spermidine/putrescine transport system permease protein.
  
     0.520
SEA61404.1
Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
     0.440
Your Current Organism:
Desulfuromusa kysingii
NCBI taxonomy Id: 37625
Other names: D. kysingii, DSM 7343, strain Kysw2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.