SEA60359.1 protein (Desulfuromusa kysingii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEA60359.1

Two component transcriptional regulator, LytTR family. (236 aa)

Predicted Functional Partners:

SEA60384.1

0.997

SEA27838.1

0.852

SEA77062.1

0.821

SEA21911.1

0.708

SEA00385.1

0.662

SEA77304.1

0.637

SDZ94990.1

0.633

SDZ77036.1

0.624

SEA26062.1

0.624

SDZ83665.1

0.611

Your Current Organism:

Desulfuromusa kysingii

NCBI taxonomy Id: 37625
Other names: D. kysingii, DSM 7343, strain Kysw2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDZ77036.1	SDZ83665.1	SAMN05660420_00221	SAMN05660420_00547	His Kinase A (phospho-acceptor) domain-containing protein.	Response regulator receiver domain-containing protein.	0.998
SDZ77036.1	SDZ94990.1	SAMN05660420_00221	SAMN05660420_00846	His Kinase A (phospho-acceptor) domain-containing protein.	Two-component system, CitB family, sensor histidine kinase DcuS.	0.702
SDZ77036.1	SEA00385.1	SAMN05660420_00221	SAMN05660420_01032	His Kinase A (phospho-acceptor) domain-containing protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.998
SDZ77036.1	SEA21911.1	SAMN05660420_00221	SAMN05660420_01489	His Kinase A (phospho-acceptor) domain-containing protein.	PAS domain S-box-containing protein.	0.998
SDZ77036.1	SEA26062.1	SAMN05660420_00221	SAMN05660420_01638	His Kinase A (phospho-acceptor) domain-containing protein.	PAS domain-containing protein.	0.997
SDZ77036.1	SEA27838.1	SAMN05660420_00221	SAMN05660420_01699	His Kinase A (phospho-acceptor) domain-containing protein.	Signal transduction histidine kinase.	0.998
SDZ77036.1	SEA60359.1	SAMN05660420_00221	SAMN05660420_02572	His Kinase A (phospho-acceptor) domain-containing protein.	Two component transcriptional regulator, LytTR family.	0.624
SDZ77036.1	SEA77062.1	SAMN05660420_00221	SAMN05660420_03119	His Kinase A (phospho-acceptor) domain-containing protein.	Transcriptional activator domain-containing protein.	0.998
SDZ77036.1	SEA77304.1	SAMN05660420_00221	SAMN05660420_03131	His Kinase A (phospho-acceptor) domain-containing protein.	Two-component system, CitB family, sensor kinase.	0.702
SDZ83665.1	SDZ77036.1	SAMN05660420_00547	SAMN05660420_00221	Response regulator receiver domain-containing protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.998
SDZ83665.1	SDZ94990.1	SAMN05660420_00547	SAMN05660420_00846	Response regulator receiver domain-containing protein.	Two-component system, CitB family, sensor histidine kinase DcuS.	0.782
SDZ83665.1	SEA00385.1	SAMN05660420_00547	SAMN05660420_01032	Response regulator receiver domain-containing protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.997
SDZ83665.1	SEA21911.1	SAMN05660420_00547	SAMN05660420_01489	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.998
SDZ83665.1	SEA26062.1	SAMN05660420_00547	SAMN05660420_01638	Response regulator receiver domain-containing protein.	PAS domain-containing protein.	0.998
SDZ83665.1	SEA27838.1	SAMN05660420_00547	SAMN05660420_01699	Response regulator receiver domain-containing protein.	Signal transduction histidine kinase.	0.998
SDZ83665.1	SEA60359.1	SAMN05660420_00547	SAMN05660420_02572	Response regulator receiver domain-containing protein.	Two component transcriptional regulator, LytTR family.	0.611
SDZ83665.1	SEA60384.1	SAMN05660420_00547	SAMN05660420_02573	Response regulator receiver domain-containing protein.	Two-component system, LytT family, sensor kinase.	0.488
SDZ83665.1	SEA77062.1	SAMN05660420_00547	SAMN05660420_03119	Response regulator receiver domain-containing protein.	Transcriptional activator domain-containing protein.	0.998
SDZ83665.1	SEA77304.1	SAMN05660420_00547	SAMN05660420_03131	Response regulator receiver domain-containing protein.	Two-component system, CitB family, sensor kinase.	0.777
SDZ94990.1	SDZ77036.1	SAMN05660420_00846	SAMN05660420_00221	Two-component system, CitB family, sensor histidine kinase DcuS.	His Kinase A (phospho-acceptor) domain-containing protein.	0.702