STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ36519.1Ca2+-binding protein, RTX toxin-related. (8874 aa)    
Predicted Functional Partners:
SDJ36470.1
RND family efflux transporter, MFP subunit.
 
     0.955
SDJ36429.1
Putative peptide zinc metalloprotease protein.
 
     0.930
SDJ36666.1
Outer membrane protein.
 
  
 0.869
secA-2
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
 
    0.811
SDJ36584.1
SapC protein.
 
     0.797
SDJ84855.1
Hemolysin-type calcium-binding repeat-containing protein.
  
     0.773
SDK37145.1
Membrane-bound acyltransferase YfiQ, involved in biofilm formation.
  
     0.772
SDJ14226.1
Protein of unknown function.
  
     0.769
SDJ15104.1
Hypothetical protein.
  
     0.767
SDI82033.1
Tripartite tricarboxylate transporter TctB family protein.
  
     0.760
Your Current Organism:
Halomonas gudaonensis
NCBI taxonomy Id: 376427
Other names: CGMCC 1.6133, H. gudaonensis, Halomonas gudaonensis Wang et al. 2007, LMG 23610, LMG:23610, strain SL014B-69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.