STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ38662.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
SDJ38695.1
Peptidase_C39 like family protein.
 
    0.976
SDJ38736.1
Uncharacterized conserved protein YeaO, DUF488 family.
       0.795
SDJ38546.1
DNA polymerase III, delta subunit.
       0.657
SDJ38510.1
LPS-assembly lipoprotein.
       0.654
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.646
SDJ38581.1
Hypothetical protein.
 
     0.602
SDJ38405.1
Zinc-ribbon containing domain-containing protein.
       0.579
SDJ38625.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.505
SDJ36666.1
Outer membrane protein.
  
    0.404
Your Current Organism:
Halomonas gudaonensis
NCBI taxonomy Id: 376427
Other names: CGMCC 1.6133, H. gudaonensis, Halomonas gudaonensis Wang et al. 2007, LMG 23610, LMG:23610, strain SL014B-69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.