STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ30440.1Putative ATP-binding cassette transporter. (556 aa)    
Predicted Functional Partners:
SDJ30477.1
Ferric iron reductase protein FhuF.
 
    0.888
SDJ30513.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.862
SDJ30553.1
Iron complex transport system substrate-binding protein.
 
    0.787
SDJ30757.1
Iron complex transport system substrate-binding protein.
 
    0.723
SDJ30590.1
TonB dependent receptor.
 
    0.703
SDJ30400.1
Iron complex transport system substrate-binding protein.
 
    0.680
SDJ30358.1
Iron complex outermembrane recepter protein.
 
    0.571
SDJ31454.1
TonB dependent receptor.
 
    0.556
SDJ30635.1
Iron complex outermembrane recepter protein.
 
    0.543
purN
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
  
 0.459
Your Current Organism:
Halomonas gudaonensis
NCBI taxonomy Id: 376427
Other names: CGMCC 1.6133, H. gudaonensis, Halomonas gudaonensis Wang et al. 2007, LMG 23610, LMG:23610, strain SL014B-69
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