Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI70982.1 | SDJ31241.1 | SAMN04487954_101105 | SAMN04487954_10468 | Protein of unknown function. | Iron complex outermembrane recepter protein. | 0.471 |
SDI78258.1 | SDI89540.1 | SAMN04487954_101299 | SAMN04487954_10224 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | 0.592 |
SDI78258.1 | SDJ30798.1 | SAMN04487954_101299 | SAMN04487954_10458 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | 0.612 |
SDI78258.1 | SDJ31241.1 | SAMN04487954_101299 | SAMN04487954_10468 | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Iron complex outermembrane recepter protein. | 0.874 |
SDI89540.1 | SDI78258.1 | SAMN04487954_10224 | SAMN04487954_101299 | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.592 |
SDI89540.1 | SDI93473.1 | SAMN04487954_10224 | SAMN04487954_102131 | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | Protein TonB. | 0.541 |
SDI89540.1 | SDJ31241.1 | SAMN04487954_10224 | SAMN04487954_10468 | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | Iron complex outermembrane recepter protein. | 0.473 |
SDI93473.1 | SDI89540.1 | SAMN04487954_102131 | SAMN04487954_10224 | Protein TonB. | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | 0.541 |
SDI93473.1 | SDJ30798.1 | SAMN04487954_102131 | SAMN04487954_10458 | Protein TonB. | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | 0.467 |
SDI93473.1 | SDJ31241.1 | SAMN04487954_102131 | SAMN04487954_10468 | Protein TonB. | Iron complex outermembrane recepter protein. | 0.869 |
SDJ00171.1 | SDJ31241.1 | SAMN04487954_102307 | SAMN04487954_10468 | Cro/C1-type HTH DNA-binding domain-containing protein. | Iron complex outermembrane recepter protein. | 0.508 |
SDJ00171.1 | SDJ36519.1 | SAMN04487954_102307 | SAMN04487954_104196 | Cro/C1-type HTH DNA-binding domain-containing protein. | Ca2+-binding protein, RTX toxin-related. | 0.645 |
SDJ00171.1 | SDJ84855.1 | SAMN04487954_102307 | SAMN04487954_108176 | Cro/C1-type HTH DNA-binding domain-containing protein. | Hemolysin-type calcium-binding repeat-containing protein. | 0.428 |
SDJ00171.1 | SDK35695.1 | SAMN04487954_102307 | SAMN04487954_11538 | Cro/C1-type HTH DNA-binding domain-containing protein. | Threonine/homoserine/homoserine lactone efflux protein. | 0.531 |
SDJ30798.1 | SDI78258.1 | SAMN04487954_10458 | SAMN04487954_101299 | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.612 |
SDJ30798.1 | SDI93473.1 | SAMN04487954_10458 | SAMN04487954_102131 | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | Protein TonB. | 0.467 |
SDJ30798.1 | SDJ31241.1 | SAMN04487954_10458 | SAMN04487954_10468 | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | Iron complex outermembrane recepter protein. | 0.544 |
SDJ31241.1 | SDI70982.1 | SAMN04487954_10468 | SAMN04487954_101105 | Iron complex outermembrane recepter protein. | Protein of unknown function. | 0.471 |
SDJ31241.1 | SDI78258.1 | SAMN04487954_10468 | SAMN04487954_101299 | Iron complex outermembrane recepter protein. | Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.874 |
SDJ31241.1 | SDI89540.1 | SAMN04487954_10468 | SAMN04487954_10224 | Iron complex outermembrane recepter protein. | Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid. | 0.473 |
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