Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ28989.1 | SDJ48917.1 | SAMN04487954_10411 | SAMN04487954_10571 | Phosphoglycolate phosphatase. | Hypothetical protein. | 0.957 |
SDJ48845.1 | SDJ48917.1 | SAMN04487954_10569 | SAMN04487954_10571 | Peptidyl-prolyl cis-trans isomerase SurA. | Hypothetical protein. | 0.622 |
SDJ48845.1 | SDJ48958.1 | SAMN04487954_10569 | SAMN04487954_10572 | Peptidyl-prolyl cis-trans isomerase SurA. | Nucleotidyl transferase. | 0.596 |
SDJ48845.1 | SDJ48989.1 | SAMN04487954_10569 | SAMN04487954_10573 | Peptidyl-prolyl cis-trans isomerase SurA. | Putative redox protein. | 0.462 |
SDJ48845.1 | apaG | SAMN04487954_10569 | SAMN04487954_10566 | Peptidyl-prolyl cis-trans isomerase SurA. | ApaG protein. | 0.750 |
SDJ48845.1 | lptD | SAMN04487954_10569 | SAMN04487954_10570 | Peptidyl-prolyl cis-trans isomerase SurA. | LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.917 |
SDJ48845.1 | rsmA | SAMN04487954_10569 | SAMN04487954_10567 | Peptidyl-prolyl cis-trans isomerase SurA. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.846 |
SDJ48917.1 | SDJ28989.1 | SAMN04487954_10571 | SAMN04487954_10411 | Hypothetical protein. | Phosphoglycolate phosphatase. | 0.957 |
SDJ48917.1 | SDJ48845.1 | SAMN04487954_10571 | SAMN04487954_10569 | Hypothetical protein. | Peptidyl-prolyl cis-trans isomerase SurA. | 0.622 |
SDJ48917.1 | SDJ48958.1 | SAMN04487954_10571 | SAMN04487954_10572 | Hypothetical protein. | Nucleotidyl transferase. | 0.996 |
SDJ48917.1 | SDJ48989.1 | SAMN04487954_10571 | SAMN04487954_10573 | Hypothetical protein. | Putative redox protein. | 0.765 |
SDJ48917.1 | SDK14783.1 | SAMN04487954_10571 | SAMN04487954_11230 | Hypothetical protein. | Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.621 |
SDJ48917.1 | apaG | SAMN04487954_10571 | SAMN04487954_10566 | Hypothetical protein. | ApaG protein. | 0.619 |
SDJ48917.1 | glmU | SAMN04487954_10571 | SAMN04487954_10239 | Hypothetical protein. | Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.940 |
SDJ48917.1 | lptD | SAMN04487954_10571 | SAMN04487954_10570 | Hypothetical protein. | LPS-assembly protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.874 |
SDJ48917.1 | nagZ | SAMN04487954_10571 | SAMN04487954_106164 | Hypothetical protein. | beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.962 |
SDJ48917.1 | rsmA | SAMN04487954_10571 | SAMN04487954_10567 | Hypothetical protein. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.619 |
SDJ48958.1 | SDJ48845.1 | SAMN04487954_10572 | SAMN04487954_10569 | Nucleotidyl transferase. | Peptidyl-prolyl cis-trans isomerase SurA. | 0.596 |
SDJ48958.1 | SDJ48917.1 | SAMN04487954_10572 | SAMN04487954_10571 | Nucleotidyl transferase. | Hypothetical protein. | 0.996 |
SDJ48958.1 | SDJ48989.1 | SAMN04487954_10572 | SAMN04487954_10573 | Nucleotidyl transferase. | Putative redox protein. | 0.765 |
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