STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK11475.1Transcriptional regulator, IclR family. (259 aa)    
Predicted Functional Partners:
SDK11353.1
Sugar phosphate isomerase/epimerase.
 
     0.756
SDK11514.1
Transcriptional regulator, IclR family.
 
    
0.729
SDJ80669.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.651
SDJ80629.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.637
SDK11393.1
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
 
    0.618
SDK11427.1
Hypothetical protein.
       0.571
SDK11549.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.539
SDK11704.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
 
  
 0.518
SDK11812.1
Protocatechuate 3,4-dioxygenase alpha subunit.
 
   
 0.506
SDK11773.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 0.456
Your Current Organism:
Halomonas gudaonensis
NCBI taxonomy Id: 376427
Other names: CGMCC 1.6133, H. gudaonensis, Halomonas gudaonensis Wang et al. 2007, LMG 23610, LMG:23610, strain SL014B-69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.