STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK14663.1Catechol 2,3-dioxygenase. (130 aa)    
Predicted Functional Partners:
SDK14713.1
Uncharacterized membrane protein.
       0.750
SDK43380.1
2-methylcitrate dehydratase PrpD.
 
    0.736
SDK43845.1
(S)-citramalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.717
SDK14746.1
KDO2-lipid IV(A) lauroyltransferase.
       0.705
SDK43339.1
2-methylcitrate dehydratase PrpD.
 
    0.699
SDK62167.1
2-methylcitrate dehydratase PrpD.
 
    0.688
SDK43712.1
itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase.
  
    0.678
SDK72407.1
2-methylcitrate dehydratase PrpD.
 
    0.665
SDJ78760.1
Ferredoxin.
  
 
 0.636
napF
Ferredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
 
 0.632
Your Current Organism:
Halomonas gudaonensis
NCBI taxonomy Id: 376427
Other names: CGMCC 1.6133, H. gudaonensis, Halomonas gudaonensis Wang et al. 2007, LMG 23610, LMG:23610, strain SL014B-69
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