Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDJ79975.1 | SDK29788.1 | SAMN04487954_10867 | SAMN04487954_11467 | Methyltransferase domain-containing protein. | Hypothetical protein. | 0.464 |
SDJ91733.1 | SDK29788.1 | SAMN04487954_10988 | SAMN04487954_11467 | Ribosome-associated protein; Belongs to the UPF0307 family. | Hypothetical protein. | 0.457 |
SDK29788.1 | SDJ79975.1 | SAMN04487954_11467 | SAMN04487954_10867 | Hypothetical protein. | Methyltransferase domain-containing protein. | 0.464 |
SDK29788.1 | SDJ91733.1 | SAMN04487954_11467 | SAMN04487954_10988 | Hypothetical protein. | Ribosome-associated protein; Belongs to the UPF0307 family. | 0.457 |
SDK29788.1 | SDK58861.1 | SAMN04487954_11467 | SAMN04487954_12014 | Hypothetical protein. | Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | 0.427 |
SDK29788.1 | cmoA | SAMN04487954_11467 | SAMN04487954_11469 | Hypothetical protein. | tRNA (cmo5U34)-methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | 0.685 |
SDK29788.1 | cmoB | SAMN04487954_11467 | SAMN04487954_11470 | Hypothetical protein. | tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.657 |
SDK29788.1 | cpdA | SAMN04487954_11467 | SAMN04487954_11476 | Hypothetical protein. | Icc protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.521 |
SDK29788.1 | parC | SAMN04487954_11467 | SAMN04487954_11465 | Hypothetical protein. | DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | 0.549 |
SDK29788.1 | parE | SAMN04487954_11467 | SAMN04487954_11466 | Hypothetical protein. | Topoisomerase-4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.852 |
SDK29788.1 | pgi-2 | SAMN04487954_11467 | SAMN04487954_11468 | Hypothetical protein. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.656 |
SDK29788.1 | queF | SAMN04487954_11467 | SAMN04487954_101157 | Hypothetical protein. | 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.441 |
SDK58861.1 | SDK29788.1 | SAMN04487954_12014 | SAMN04487954_11467 | Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). | Hypothetical protein. | 0.427 |
cmoA | SDK29788.1 | SAMN04487954_11469 | SAMN04487954_11467 | tRNA (cmo5U34)-methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | Hypothetical protein. | 0.685 |
cmoA | cmoB | SAMN04487954_11469 | SAMN04487954_11470 | tRNA (cmo5U34)-methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | 0.986 |
cmoA | parE | SAMN04487954_11469 | SAMN04487954_11466 | tRNA (cmo5U34)-methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | Topoisomerase-4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.710 |
cmoA | pgi-2 | SAMN04487954_11469 | SAMN04487954_11468 | tRNA (cmo5U34)-methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.613 |
cmoB | SDK29788.1 | SAMN04487954_11470 | SAMN04487954_11467 | tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | Hypothetical protein. | 0.657 |
cmoB | cmoA | SAMN04487954_11470 | SAMN04487954_11469 | tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | tRNA (cmo5U34)-methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | 0.986 |
cmoB | parE | SAMN04487954_11470 | SAMN04487954_11466 | tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. | Topoisomerase-4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.594 |
page 1 of 2